Publications

2024

Generalizing CNNs to graphs with learnable neighborhood quantization. Nkansah IO, Gallagher N, Sandilya R, Liston C, and Grosenick L. Accepted NeurIPS (2024)
Epicare: A reinforcement learning benchmark for dynamic treatment regimes. Hargrave M, Spaeth A, and Grosenick L. Accepted NeurIPS (2024)
Discrete representation learning for multivariate time series. Ajirak M, Elbau I, Solomonov, N, and Grosenick L. EUSIPCO (2024)
Frontostriatal salience network expansion in individuals in depression. Lynch CJ, Elbau IG, Ng T, Ayaz A, Zhu S, Wolk D, Manfredi N, Johnson M, Chang M, Chou J, Summerville I, Ho C, Lueckel M, Bukhari H, Buchanan D, Victoria LW, Solomonov N, Goldwaser E, Moia S, Caballero-Gaudes C, Downar J, Vila-Rodriguez F, Daskalakis ZJ, Blumberger DM, Kay K, Aloysi A, Gordon EM, Bhati MT, Williams N, Power JD, Zebley B, Grosenick L, Gunning FM, Liston C. Nature 633(8030):624-633 (2024)
Bidirectional regulation of motor circuits using magnetogenetic gene therapy. Unda SR, Pomeranz LE, Marongiu R, Yu X, Kelly L, Hassanzadeh G, Molina H, Vaisey G, Wang P, Dyke JP, Fung EK, Grosenick L, Zirkel R, Antoniazzi AM, Norman S, Liston C, Schaffer C, Nishimura N, Stanley SA, Friedman JM, Kaplitt MG. Science Advances 10(41):eadp9150 (2024)
Simple and scalable algorithms for cluster-aware precision medicine. Buch AM, Liston C, and Grosenick L. Proceedings of The 27th International Conference on Artificial Intelligence and Statistics (AISTATS) PMLR 238:136-144 (2024)
Dimensional and categorical solutions to parsing depression heterogeneity in a large single-site sample. Dunlop K, Grosenick L, Downar J, Vila-Rodriguez F, Gunning FM, Daskalakis ZJ, Blumberger DM, Liston C. Biological Psychiatry 96(6):422-434 (2024)

2023

Regulation of social interaction in mice by a frontostriatal circuit modulated by established hierarchical relationships. Fetcho RN, Hall BS, Estrin DJ, Walsh AP, Schuette PJ, Kaminsky K, Singh A, Roshgodal J, Bavley CC, Nadkarni V, Antigua S, Huynh TN, Grosenick L, Carthy C, Komer L, Adhikari A, Lee FS, Rajadhyaksha AM, Liston C. Nature Communications (2023)
Molecular and network-level mechanisms explaining individual differences in autism spectrum disorder. Buch AM, Vértes PE, Seidlitz J, Kim SH, Grosenick L*, Liston C*. Nature Neuroscience (2023); *co-senior authorship

2022

Assessing the generalizability and stability of biologically-based subtypes of depression. Dunlop K, Grosenick L, Downar J, Vila-Rodriguez F, Gunning F, Daskalakis Z, Blumberger DM, Liston C. Neuropharmacology (2022)
Hierarchically clustered PCA and CCA via a convex clustering penalty. Buch AM, Liston C, Grosenick L. arXiv (2022)
CopeNYP: a brief remote psychological intervention reduces health care workers' depression and anxiety symptoms during COVID-19 pandemic. Solomonov N, Kanellopoulos D, Grosenick L, Wilkins V, Goldman R, Ritholtz S, Falk A, Gunning FM. World Psychiatry (2022)

2019

Functional and optogenetic approaches to discovering stable subtype-specific circuit mechanisms in depression. Grosenick L, Shi TC, Gunning FM, Dubin MJ, Downar J, Liston C. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging (2019)
Neuronal dynamics regulating brain and behavioral state transitions. Andalman AS, Burns VM, Lovett-Barron M, Broxton M, Poole B, Yang SJ, Grosenick L, Lerner TN, Chen R, Benster T, Mourrain P, Rajan K, Deisseroth K. Cell (2019)
Sustained rescue of prefrontal circuit dysfunction by antidepressant-induced spine formation. Moda-Sava RN, Murdock MH, Parekh PK, Fetcho RN, Huang BS, Huynh TN, Witztum J, Shaver DC, Rosenthal DL, Alway EJ, Lopez K. Science (2019)
Fast near-whole–brain imaging in adult Drosophila during responses to stimuli and behavior. Aimon S, Katsuki T, Jia T, Grosenick L, Broxton M, Deisseroth K, Sejnowski TJ, Greenspan RJ. PLoS Biology (2019)

2018

Coordinated reductions in excitatory input to the nucleus accumbens underlie food consumption. Reed SJ, Lafferty CK, Mendoza JA, Yang AK, Davidson TJ, Grosenick L, Deisseroth K, Britt JP. Neuron (2018)
Extinction of auditory threat memory triggers activation of p70 S6 kinase 1 in the basolateral nucleus of the amygdala. Huynh TN, Santini E, Mojica E, Fink AE, Hall BS, Fetcho RN, Grosenick L, Deisseroth K, LeDoux JE, Liston C, Klann E. Molecular Psychiatry (2018)
Activation of a novel p70 S6 kinase 1-dependent intracellular cascade in the basolateral nucleus of the amygdala is required for the acquisition of extinction memory. Huynh TN, Santini E, Mojica E, Fink AE, Hall BS, Fetcho RN, Grosenick L, Deisseroth K, LeDoux JE, Liston C, Klann E. Molecular Psychiatry (2018)
Fast near-whole brain imaging in adult Drosophila during responses to stimuli and behavior. Aimon S, Katsuki T, Jia T, Grosenick L, Broxton M, Deisseroth K, Sejnowski TJ, Greenspan RJ. BioRxiv (2018)

2017

Resting-state connectivity biomarkers define neurophysiological subtypes of depression. Drysdale AT, Grosenick L, Downar J, Dunlop K, Mansouri F, Meng Y, Fetcho RN, Zebley B, Oathes DJ, Etkin A, Schatzberg AF. Nature Medicine (2017)
Identification of cellular-activity dynamics across large tissue volumes in the mammalian brain. Grosenick L, Broxton M, Kim CK, Liston C, Poole B, Yang S, Andalman A, Scharff E, Cohen N, Yizhar O, Ramakrishnan C. BioRxiv (2017)

2016

Hypothalamic control of male aggression-seeking behavior. Falkner AL, Grosenick L, Davidson TJ, Deisseroth K, Lin D. Nature Neuroscience (2016)
Prefrontal cortical regulation of brainwide circuit dynamics and reward-related behavior. Ferenczi EA, Zalocusky KA, Liston C, Grosenick L, Warden MR, Amatya D, Katovich K, Mehta H, Patenaude B, Ramakrishnan C, Kalanithi P, Etkin A, Knutson B, Glover GH, Deisseroth K. Science (2016)

2015

SPED light sheet microscopy: fast mapping of biological system structure and function. Tomer R, Lovett-Barron M, Kauvar I, Andalman A, Burns VM, Sankaran S, Grosenick L, Broxton M, Yang S, Deisseroth K. Cell (2015)
Wirelessly powered, fully internal optogenetics for brain, spinal and peripheral circuits in mice. Montgomery KL, Yeh AJ, Ho JS, Tsao V, Mohan Iyer S, Grosenick L, Ferenczi EA, Tanabe Y, Deisseroth K, Delp SL, Poon AS. Nature Methods (2015)
Self-tracking energy transfer for neural stimulation in untethered mice. Ho JS, Tanabe Y, Iyer SM, Christensen AJ, Grosenick L, Deisseroth K, Delp SL, Poon AS. Physical Review Applied (2015)
Closed-loop and activity-guided optogenetic control. Grosenick L, Marshel JH, Deisseroth K. Neuron (2015)

2014

Enhancing the performance of the light field microscope using wavefront coding. Cohen N, Yang S, Andalman A, Broxton M, Grosenick L, Deisseroth K, Horowitz M, Levoy M. Optics Express (2014)
INTRSECT: single-component targeting of cells using multiple-feature Boolean logic. Fenno LE, Mattis J, Ramakrishnan C, Hyun M, Lee SY, He M, Tucciarone J, Selimbeyoglu A, Berndt A, Grosenick L, Zalocusky KA. Nature Methods (2014)
Natural neural projection dynamics underlying social behavior. Gunaydin LA, Grosenick L, Finkelstein JC, Kauvar IV, Fenno LE, Adhikari A, Lammel S, Mirzabekov JJ, Airan RD, Zalocusky KA, Tye KM. Cell (2014)
A generalized least-square matrix decomposition. Allen GI, Grosenick L, Taylor J. Journal of the American Statistical Association (2014)

2013

Wave optics theory and 3-D deconvolution for the light field microscope. Broxton M, Grosenick L, Yang S, Cohen N, Andalman A, Deisseroth K, Levoy M. Optics Express (2013)
Interpretable whole-brain prediction analysis with GraphNet. Grosenick L, Klingenberg B, Katovich K, Knutson B, Taylor JE. NeuroImage (2013)
Structural and molecular interrogation of intact biological systems. Chung K, Wallace J, Kim SY, Kalyanasundaram S, Andalman AS, Davidson TJ, Mirzabekov JJ, Zalocusky KA, Mattis J, Denisin AK, Pak S, Bernstein H, Ramakrishnan C, Grosenick L, Gradinaru V, Deisseroth K. Nature (2013)

2012

Deterministic matrices matching the compressed sensing phase transitions of Gaussian random matrices. Monajemi H et al. PNAS (2012)
Optetrode: a multichannel readout for optogenetic control in freely moving mice. Anikeeva P, Andalman AS, Witten I, Warden M, Goshen I, Grosenick L. Nature Neuroscience (2012)

2011

Amygdala circuity mediating reversilbe and bidirectional control of anxiety. Tye KM, Prakash R, Kim SY, Fenno LE, Grosenick L, Zarabi H, Thompson KR, Gradinaru V, Ramakrishnan C, Deisseroth K. Nature (2011)

2008

Quanitifying inter-subject agreement in brain-imaging analyses. Wong DK, Grosenick L, Uy ET, Perreau Guimaraes M, Carvalhaes CG, Desain P, Suppes P. NeuroImage (2008)

2007

Expression, Structure, Function, and Evolution of Gonadotropin-Releasing Hormone (GnRH) Receptors GnRH-R1SHS and GnRH-R2PEY in the Teleost, Astatotilapia burtoni. Flanagan CA, Chen CC, Coetsee M, Mamputha S, Whitlock KE, Bredenkamp N, Grosenick L, Fernld RD, Illing N. Endocrinology (2007)
Fish can infer social rank by observation alone. Grosenick L, Clement TS, Fernald RD. Nature (2007)